1. A. van Nas*, D. GuhaThakurta, D.*, et. al., (2008) Sexual dimorphism of gene expression and regulatory networks in mouse tissues and their relationship to metabolic disorders. *Equal contribution.  Endocrinology, 150(3), 1235-1249. Also see 'News and Views' on the article.

2. W-L Su, B. Modrek, D. GuhaThakurta, S. Edwards, S., E.E. Schadt, J. Johnson, and J. Castle (2008) Widespread strain and sex bias in alternative splicing events detected using exon junction microarrays. BMC Genomic, 9(1): 273.

3. Schadt E.E., Molony, C., Chudin, E., … GuhaThakurta, D., … Ulrich, R. (2008). Mapping the genetic architecture of gene expression in human liver. PLoS Biology, 6, e107. (publisher pdf)

4. D. GuhaThakurta and G.D. Stormo (2007) Finding regulatory elements in DNA sequence. Bioinformatics (Methods Express Series), Scion Publishing and Cold Spring Harbor Laboratory Press. Book Chapter.

5. D. GuhaThakurta, T. Xie, M. Anand, S.W. Edwards, G. Li, S. Wang and E.E. Schadt (2006) Cis-regulatory variations: A study of SNPs around genes showing cis-linkage in segregating mouse populations. BMC Genomics, 7:235. (publisher pdf)

6. D. GuhaThakurta (2006) Computational Identification of Transcriptional Regulatory Elements in DNA Sequence. Nucleic Acids Res., 34, 3585-3598. (publisher pdf)

7. E. Schadt, J. Lamb, X. Yang, J. Zhu, S.E. Edwards, D. Guhathakurta, S. Sieberts, S., S. Monks, M. Rietman, C. Zhang, P.Y. Lum, A. Leonardson, R. Thieringer, J. Metzger, L. Yang, J. Castle, H. Zhu, F.K. Shera, T. Drake, A. Sachs, A.J. Lusis (2005) An integrative genomics approach to infer causal associations between gene expression and disease. Nature Genetics, 37, 710-707. (publisher pdf)

8. M. S. Dunstan, D. GuhaThakurta, D.E. Draper, and G.L. Conn (2005) Coevolution of Protein and RNA Structures Within a Highly Conserved Ribosomal Domain. Chemistry and Biology, 12, 201-206. (download PDF version).

9. D. GuhaThakurta, L.A. Schriefer, R.H. Waterston, and G.D. Stormo (2004) Identification of Novel Transcription Regulatory Elements in Caenorhabditis Elegans Muscle Genes. Genome Research, 14, 2457-2468. (download PDF version)

10. E.E. Schadt, S.W. Edwards, D. GuhaThakurta, D. Holder, et.al., (2004) A Comprehensive Transcript Index of the Human Genome Generated using Microarrays and Computationa Approaches. Genome Biology, 5(10):R73. (download PDF version)

11. J. Zhu, P.Y. Lum, J. Lamb, D. GuhaThakurta, S.W. Edwards, R. Thieringer, J.P. Berger, M.S. Wu, J. Thompson, A.B. Sachs, and E.E. Schadt (2004) An Integrative Genomics Approach to the Reconstruction of Gene Networks in Segregating Populations. Cytogentic and Genome Research, 105, 363-374. ( publisher pdf)

12. L. Ying, E.E. Schadt, V. Svetnik, D. Holder, S. Edwards, and D. GuhaThakurta (2003) Identification of Chromosomal Regions Containing Transcribed Sequences Using Microarrays and Computational Methods. Proceedings of the American Statistical Association, 2003, Biopharmaceutical Section, Alexandria, VA, pp. 4672-4677. (download PDF version)

13. P. Tata, S. Miles, D. GuhaThakurta, D. Jemiolo, and L. Breeden, (2002) Conserved homeodomain proteins interact with MADS box protein Mcm1 to restrict ECB-dependent transcription to the M/G1 phase of the cell cycle. Genes and Development, 16, 3034-3045.(download PDF version)

14. D. GuhaThakurta, L. Palomar, G.D. Stormo, P. Tedesco, T.E. Johnson, D. Walker, G. Lithgow, S. Kim, and C.D. Link (2002) Identification of a novel cis-regulatory element involved the heat shock response in C. elegans using microarray gene expression and computational methods. Genome Research, 12, 701-712. (download PDF version). [Cover article for May 2002].
The microarray data for this paper is available from the Stanford Microarray Database.

15. D. GuhaThakurta and L.A. Schriefer, M.C. Hresko, R.H. Waterston and G.D. Stormo (2002) Identifying Muscle Regulatory elements and Genes in the Nematode Caenorhabditis elegans. Proceedings of the Pacific Symposium on Biocomputing (PSB, 2002), 7, 425-436 (download PDF version). Supplementary Material.

16. D. GuhaThakurta and G.D. Stormo (2001) Identifying Target Sites for Cooperatively Binding Factors. Bioinformatics, 17, 608-621.(download PDF version)

17. D. GuhaThakurta and G.D. Stormo (2001) Identifying Target Sites for Cooperatively Binding Factors. Currents in Computational Molecular Biology, Ed. El-Mabrouk N., Lengauer, T., and Sankoff, D. pp. 39-40. Les Publications CRM, Montreal, Canada. (Full paper appears in Bioinformatics, 17, 608-621.) (download PDF version)

18. D. GuhaThakurta and D.E. Draper (2000) Contributions of Basic Residues to Ribosomal Protein L11 Recognition of RNA. Journal of Molecular Biology, 295, 569-580. (download PDF version).

19. Draper, D.E., Conn, G.L., Gittis, A.G., GuhaThakurta, D., Lattman, E.E., and Reynaldo, L.P., (2000) RNA Tertiary Structure and Protein Recognition in L11-RNA Complex. In Garrett, R. et. al (eds.) The Ribosome: Structure, Function, Antibiotics and Cellular Interactions, (American Society for Microbiology, Washington DC) [Contents].

20. D. GuhaThakurta, and D.E. Draper (1999) Protein-RNA Sequence Covariation in a Ribosomal Protein-RNA Complex. Biochemistry, 38, 3633-3640. (download PDF version).

21. Y-Y. Xing, D. GuhaThakurta, and D.E. Draper (1997) The RNA Binding Domain of Ribosomal Protein L11 is Structurally Similar to Homeodomains. Nature Structural Biology 4, 24-27. Comment in Nature Structural Biology

22. G.C. Maikap, D. Guhathakurta, and J. Iqbal (1995) Cobalt Catalyzed Benzylic Oxidation with Molecular Oxygen SYNLETT, 2, 189-190. ( Abstract) (dowload PDF version).